Published on in Vol 22, No 10 (2020): October

Preprints (earlier versions) of this paper are available at https://preprints.jmir.org/preprint/22299, first published .
CoV-Seq, a New Tool for SARS-CoV-2 Genome Analysis and Visualization: Development and Usability Study

CoV-Seq, a New Tool for SARS-CoV-2 Genome Analysis and Visualization: Development and Usability Study

CoV-Seq, a New Tool for SARS-CoV-2 Genome Analysis and Visualization: Development and Usability Study

Journals

  1. Bernasconi A, Canakoglu A, Masseroli M, Pinoli P, Ceri S. A review on viral data sources and search systems for perspective mitigation of COVID-19. Briefings in Bioinformatics 2021;22(2):664 View
  2. Singh N, Villoutreix B. Resources and computational strategies to advance small molecule SARS-CoV-2 discovery: Lessons from the pandemic and preparing for future health crises. Computational and Structural Biotechnology Journal 2021;19:2537 View
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  4. Zhang L, Cao R, Mao T, Wang Y, Lv D, Yang L, Tang Y, Zhou M, Ling Y, Zhang G, Qiu T, Cao Z. SAS: A Platform of Spike Antigenicity for SARS-CoV-2. Frontiers in Cell and Developmental Biology 2021;9 View
  5. Paudel S, Dahal A, Bhattarai H. Temporal Analysis of SARS-CoV-2 Variants during the COVID-19 Pandemic in Nepal. COVID 2021;1(2):423 View
  6. Abulsoud A, El-Husseiny H, El-Husseiny A, El-Mahdy H, Ismail A, Elkhawaga S, Khidr E, Fathi D, Mady E, Najda A, Algahtani M, Theyab A, Alsharif K, Albrakati A, Bayram R, Abdel-Daim M, Doghish A. Mutations in SARS-CoV-2: Insights on structure, variants, vaccines, and biomedical interventions. Biomedicine & Pharmacotherapy 2023;157:113977 View
  7. Arriaga-Canon C, Contreras-Espinosa L, Rebollar-Vega R, Montiel-Manríquez R, Cedro-Tanda A, García-Gordillo J, Álvarez-Gómez R, Jiménez-Trejo F, Castro-Hernández C, Herrera L. Transcriptomics and RNA-Based Therapeutics as Potential Approaches to Manage SARS-CoV-2 Infection. International Journal of Molecular Sciences 2022;23(19):11058 View
  8. Beck K, Seabolt E, Agarwal A, Nayar G, Bianco S, Krishnareddy H, Ngo T, Kunitomi M, Mukherjee V, Kaufman J. Semi-Supervised Pipeline for Autonomous Annotation of SARS-CoV-2 Genomes. Viruses 2021;13(12):2426 View
  9. Nagpal S, Pal R, Ashima , Tyagi A, Tripathi S, Nagori A, Ahmad S, Mishra H, Malhotra R, Kutum R, Sethi T. Genomic Surveillance of COVID-19 Variants With Language Models and Machine Learning. Frontiers in Genetics 2022;13 View
  10. Bello X, Pardo-Seco J, Gómez-Carballa A, Weissensteiner H, Martinón-Torres F, Salas A. CovidPhy: A tool for phylogeographic analysis of SARS-CoV-2 variation. Environmental Research 2022;204:111909 View
  11. Kim J, Cheon S, Ahn I. NGS data vectorization, clustering, and finding key codons in SARS-CoV-2 variations. BMC Bioinformatics 2022;23(1) View
  12. Essabbar A, Kartti S, Alouane T, Hakmi M, Belyamani L, Ibrahimi A. IDbSV: An Open-Access Repository for Monitoring SARS-CoV-2 Variations and Evolution. Frontiers in Medicine 2021;8 View
  13. Rahman M, Hoque M, Chowdhury S, Siddique M, Islam O, Galib S, Islam M, Hossain M. Temporal dynamics and fatality of SARS‐CoV‐2 variants in Bangladesh. Health Science Reports 2023;6(4) View
  14. Ma L, Zhao W, Huang T, Jin E, Wu G, Zhao W, Bao Y. On the collection and integration of SARS-CoV-2 genome data. Biosafety and Health 2023;5(4):204 View
  15. Tan M, Xia J, Luo H, Meng G, Zhu Z. Applying the digital data and the bioinformatics tools in SARS-CoV-2 research. Computational and Structural Biotechnology Journal 2023;21:4697 View
  16. Chaley M, Kutyrkin V. Choice of Target in the Genomes of Prototypic Strains to Recognize Subgenus of Coronaviruses. Mathematical Biology and Bioinformatics 2023;18(2):267 View
  17. Islam M, Marzan A, Arman M, Shahi S, Sakif T, Hossain M, Islam T, Hoque M. Some common deleterious mutations are shared in SARS-CoV-2 genomes from deceased COVID-19 patients across continents. Scientific Reports 2023;13(1) View
  18. Lu Z, Wang X, Chen J. AI-empowered visualization of nucleic acid testing. Life Sciences 2024;359:123209 View
  19. Nawaz M, Nawaz M, Gong Y, Fournier-Viger P, Diallo A. In silico framework for genome analysis. Future Generation Computer Systems 2025;164:107585 View
  20. Feng Y, Chen S, Wang A, Zhao Z, Chen C. Trends and impacts of SARS-CoV-2 genome sharing: a comparative analysis of China and the global community, 2020–2023. Frontiers in Public Health 2024;12 View